Report

Author

Fábio M. de Lima

Published

April 4, 2024

1 Quality control

1.1 Summary

1.2 Total of reads

Filename Total_Sequences
stdin:file-20 6
stdin:file-4 14
stdin:file-15 19
stdin:file-2 20
stdin:file-22 86
stdin:file-10 140
stdin:file-16 151
stdin:file-3 258
stdin:file-21 399
stdin:file-14 1542
stdin:file-9 1778
stdin:file-13 33047
stdin:file-11 41802
stdin:file-8 54582
stdin:file-17 86365
stdin:file-5 91806
stdin:file-23 174622
stdin:file-12 182868
stdin:file-19 189562
stdin:file-18 202689
stdin:file-1 242625
stdin:file-7 256411
stdin:file-6 566507

1.3 Sequence length

1.4 Per Base Sequence Qualities

1.5 Mean Sequence Quality Per Read

1.6 Per Base Sequence Content

1.7 Sequence Duplication Levels

1.8 GC content

2 ITS

2.1 Denoise stats

Denoising stats
input filtered percentage.of.input.passed.filter denoised non.chimeric percentage.of.input.non.chimeric
file-22 3 2 66.67 1 1 33.33
file-16 4 3 75.00 2 2 50.00
file-21 4 4 100.00 1 1 25.00
file-20 5 5 100.00 1 1 20.00
file-4 8 5 62.50 1 1 12.50
file-10 11 5 45.45 5 5 45.45
file-2 12 11 91.67 9 9 75.00
file-15 18 12 66.67 6 6 33.33
file-8 48 22 45.83 21 21 43.75
file-12 62 38 61.29 38 38 61.29
file-11 63 45 71.43 41 41 65.08
file-9 206 119 57.77 117 117 56.80
file-3 246 207 84.15 66 66 26.83
file-14 1467 840 57.26 838 838 57.12
file-13 24918 18827 75.56 18825 18726 75.15
file-5 35348 28260 79.95 28249 28205 79.79
file-6 63511 49349 77.70 49330 49248 77.54
file-17 82332 63866 77.57 63762 63762 77.44
file-23 156042 114111 73.13 113544 113342 72.64
file-19 182073 156508 85.96 156481 156191 85.78
file-18 193034 161877 83.86 161868 160890 83.35
file-1 233433 158227 67.78 158059 157635 67.53
file-7 245262 202931 82.74 202913 202370 82.51

2.2 Alpha-rarefaction

2.3 Taxonomy

Taxonomy
Sample taxonomy blast vsearch sklearn
file-1 k__Fungi 4.0 202.0 0
k__Fungi; p__Ascomycota 0 156967.0 0
k__Fungi; p__Ascomycota; c__Dothideomycetes 0 0 549.0
k__Fungi; p__Ascomycota; c__Dothideomycetes; o__Mycosphaerellales; f__Mycosphaerellaceae 0 0 80.0
k__Fungi; p__Ascomycota; c__Dothideomycetes; o__Mycosphaerellales; f__Mycosphaerellaceae; g__Mycosphaerella; s__Mycosphaerella_fijiensis 0 0 156318.0
k__Fungi; p__Ascomycota; c__Dothideomycetes; o__Pleosporales; f__Coniothyriaceae; g__Coniothyrium; s__Coniothyrium_sidae 0 0 4.0
k__Fungi; p__Ascomycota; c__Orbiliomycetes; o__Orbiliales; f__Orbiliaceae 0 253.0 0
k__Fungi; p__Ascomycota; c__Orbiliomycetes; o__Orbiliales; f__Orbiliaceae; g__Orbiliaceae_gen_Incertae_sedis; s__Orbiliaceae_sp 0 213.0 0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Nectriaceae 13.0 0 0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Nectriaceae; g__Fusarium 0 0 13.0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Magnaporthales; f__Pyriculariaceae; g__Neocordana 0 0 3.0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Magnaporthales; f__Pyriculariaceae; g__Neocordana; s__Neocordana_musae 3.0 0 0
file-10 k__Fungi; p__Ascomycota; c__Orbiliomycetes; o__Orbiliales; f__Orbiliaceae 0 5.0 0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Cordycipitaceae; g__Cordyceps 0 0 5.0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Cordycipitaceae; g__Cordyceps; s__Cordyceps_javanica 5.0 0 0
file-11 k__Fungi 29.0 0 0
k__Fungi; p__Ascomycota 0 9.0 0
k__Fungi; p__Ascomycota; c__Orbiliomycetes; o__Orbiliales; f__Orbiliaceae 0 29.0 0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 0 0 7.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_sp 7.0 0 0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Hypocreaceae 3.0 0 0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Hypocreaceae; g__Trichoderma 0 3.0 3.0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Ophiocordycipitaceae; g__Purpureocillium 0 0 29.0
k__Fungi; p__Basidiomycota; c__Tremellomycetes; o__Tremellales 2.0 0 0
k__Fungi; p__Basidiomycota; c__Tremellomycetes; o__Tremellales; f__Rhynchogastremataceae; g__Papiliotrema; s__Papiliotrema_laurentii 0 0 2.0
file-12 k__Fungi; p__Ascomycota 0 34.0 0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 10.0 0 10.0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Ophiocordycipitaceae 0 0 24.0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Ophiocordycipitaceae; g__Purpureocillium 24.0 0 0
k__Fungi; p__Fungi_phy_Incertae_sedis; c__Fungi_cls_Incertae_sedis; o__Fungi_ord_Incertae_sedis; f__Fungi_fam_Incertae_sedis; g__Fungi_gen_Incertae_sedis; s__Fungi_sp 4.0 4.0 0
file-13 k__Fungi 4064.0 68.0 0
k__Fungi; p__Ascomycota 0 10924.0 128.0
k__Fungi; p__Ascomycota; c__Dothideomycetes; o__Pleosporales; f__Phaeosphaeriaceae 0 0 17.0
k__Fungi; p__Ascomycota; c__Orbiliomycetes; o__Orbiliales; f__Orbiliaceae 0 2899.0 0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Debaryomycetaceae; g__Hyphopichia; s__Hyphopichia_burtonii 5401.0 0 5401.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 0 0 6.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_sp 6.0 0 0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales 0 0 74.0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Cordycipitaceae; g__Cordyceps 0 0 32.0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Cordycipitaceae; g__Cordyceps; s__Cordyceps_javanica 32.0 0 0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Ophiocordycipitaceae; g__Purpureocillium 0 0 2762.0
k__Fungi; p__Basidiomycota; c__Agaricomycetes; o__Auriculariales; f__Auriculariaceae; g__Auricularia 0 0 3581.0
k__Fungi; p__Basidiomycota; c__Agaricomycetes; o__Polyporales; f__Polyporaceae 0 0 12.0
k__Fungi; p__Basidiomycota; c__Agaricomycetes; o__Polyporales; f__Polyporaceae; g__Funalia; s__Funalia_sp 12.0 0 0
k__Fungi; p__Basidiomycota; c__Microbotryomycetes; o__Sporidiobolales; f__Sporidiobolaceae; g__Rhodotorula; s__Rhodotorula_toruloides 0 0 1211.0
k__Fungi; p__Basidiomycota; c__Tremellomycetes; o__Tremellales; f__Cryptococcaceae; g__Kwoniella; s__Kwoniella_heveanensis 0 0 599.0
k__Fungi; p__Fungi_phy_Incertae_sedis; c__Fungi_cls_Incertae_sedis; o__Fungi_ord_Incertae_sedis; f__Fungi_fam_Incertae_sedis; g__Fungi_gen_Incertae_sedis; s__Fungi_sp 4903.0 4835.0 0
file-14 k__Fungi; p__Ascomycota; c__Orbiliomycetes; o__Orbiliales; f__Orbiliaceae 0 838.0 0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Cordycipitaceae; g__Cordyceps 0 0 838.0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Cordycipitaceae; g__Cordyceps; s__Cordyceps_javanica 838.0 0 0
file-15 k__Fungi; p__Ascomycota; c__Orbiliomycetes; o__Orbiliales; f__Orbiliaceae 0 6.0 0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Cordycipitaceae; g__Cordyceps 0 0 6.0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Cordycipitaceae; g__Cordyceps; s__Cordyceps_javanica 6.0 0 0
file-16 k__Fungi 0 2.0 0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 0 0 2.0
file-17 k__Fungi 0 27773.0 0
k__Fungi; p__Ascomycota 0 35640.0 0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 199.0 0 63384.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_sp 35033.0 0 0
k__Fungi; p__Basidiomycota; c__Agaricomycetes; o__Agaricales; f__Psathyrellaceae; g__Coprinellus 0 0 29.0
k__Fungi; p__Fungi_phy_Incertae_sedis; c__Fungi_cls_Incertae_sedis; o__Fungi_ord_Incertae_sedis; f__Fungi_fam_Incertae_sedis; g__Fungi_gen_Incertae_sedis; s__Fungi_sp 349.0 349.0 0
file-18 k__Fungi 0 4070.0 0
k__Fungi; p__Ascomycota 0 156810.0 0
k__Fungi; p__Ascomycota; c__Dothideomycetes 0 0 32.0
k__Fungi; p__Ascomycota; c__Dothideomycetes; o__Pleosporales; f__Didymellaceae 0 0 267.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 74536.0 0 160581.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_sp 82310.0 0 0
k__Fungi; p__Fungi_phy_Incertae_sedis; c__Fungi_cls_Incertae_sedis; o__Fungi_ord_Incertae_sedis; f__Fungi_fam_Incertae_sedis; g__Fungi_gen_Incertae_sedis; s__Fungi_sp 222.0 4.0 0
file-19 k__Fungi 309.0 2689.0 0
k__Fungi; p__Ascomycota 0 134592.0 0
k__Fungi; p__Ascomycota; c__Dothideomycetes; o__Pleosporales; f__Didymellaceae 0 0 3297.0
k__Fungi; p__Ascomycota; c__Eurotiomycetes; o__Eurotiales; f__Aspergillaceae 0 0 2593.0
k__Fungi; p__Ascomycota; c__Eurotiomycetes; o__Eurotiales; f__Aspergillaceae; g__Aspergillus 145.0 0 145.0
k__Fungi; p__Ascomycota; c__Orbiliomycetes; o__Orbiliales; f__Orbiliaceae 0 828.0 0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 57369.0 0 131514.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_sp 72007.0 0 0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Hypocreaceae; g__Trichoderma 0 0 309.0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Nectriaceae; g__Fusarium 12521.0 12521.0 12521.0
k__Fungi; p__Basidiomycota; c__Agaricomycetes; o__Polyporales; f__Phanerochaetaceae; g__Crepatura; s__Crepatura_sp 0 0 828.0
k__Fungi; p__Basidiomycota; c__Wallemiomycetes; o__Wallemiales; f__Wallemiaceae; g__Wallemia; s__Wallemia_sp 0 0 661.0
k__Fungi; p__Fungi_phy_Incertae_sedis; c__Fungi_cls_Incertae_sedis; o__Fungi_ord_Incertae_sedis; f__Fungi_fam_Incertae_sedis; g__Fungi_gen_Incertae_sedis; s__Fungi_sp 5717.0 2694.0 0
file-2 k__Fungi; p__Ascomycota 0 9.0 0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 9.0 0 9.0
file-20 k__Fungi; p__Ascomycota 0 1.0 0
k__Fungi; p__Ascomycota; c__Dothideomycetes; o__Mycosphaerellales; f__Mycosphaerellaceae; g__Mycosphaerella; s__Mycosphaerella_fijiensis 0 0 1.0
file-21 k__Fungi; p__Ascomycota 0 1.0 0
k__Fungi; p__Ascomycota; c__Dothideomycetes; o__Mycosphaerellales; f__Mycosphaerellaceae; g__Mycosphaerella; s__Mycosphaerella_fijiensis 0 0 1.0
file-22 k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 0 0 1.0
file-23 k__Fungi 0 5292.0 0
k__Fungi; p__Ascomycota 0 23016.0 0
k__Fungi; p__Ascomycota; c__Dothideomycetes; o__Capnodiales; f__Cladosporiaceae; g__Cladosporium; s__Cladosporium_aciculare 8435.0 0 8435.0
k__Fungi; p__Basidiomycota; c__Malasseziomycetes; o__Malasseziales; f__Malasseziaceae; g__Malassezia; s__Malassezia_sp 61.0 0 0
k__Fungi; p__Fungi_phy_Incertae_sedis; c__Fungi_cls_Incertae_sedis; o__Fungi_ord_Incertae_sedis; f__Fungi_fam_Incertae_sedis; g__Fungi_gen_Incertae_sedis; s__Fungi_sp 90326.0 85034.0 0
file-3 k__Fungi; p__Ascomycota 0 14.0 0
k__Fungi; p__Ascomycota; c__Dothideomycetes; o__Mycosphaerellales; f__Mycosphaerellaceae; g__Mycosphaerella; s__Mycosphaerella_fijiensis 0 0 2.0
k__Fungi; p__Ascomycota; c__Orbiliomycetes; o__Orbiliales; f__Orbiliaceae 0 22.0 0
k__Fungi; p__Ascomycota; c__Orbiliomycetes; o__Orbiliales; f__Orbiliaceae; g__Orbiliaceae_gen_Incertae_sedis; s__Orbiliaceae_sp 0 30.0 0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 0 0 12.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_sp 12.0 0 0
file-4 k__Fungi; p__Ascomycota 0 1.0 0
k__Fungi; p__Ascomycota; c__Dothideomycetes; o__Mycosphaerellales; f__Mycosphaerellaceae; g__Mycosphaerella; s__Mycosphaerella_fijiensis 0 0 1.0
file-5 k__Fungi 0 101.0 9.0
k__Fungi; p__Ascomycota 16.0 28104.0 0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales 80.0 0 16.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Pichiaceae; g__Pichia; s__Pichia_membranifaciens 62.0 0 62.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetaceae; g__Issatchenkia; s__Issatchenkia_orientalis 0 0 80.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida 0 0 25.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_californica 0 0 8.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 4406.0 0 27996.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_sp 23550.0 0 0
k__Fungi; p__Basidiomycota; c__Tremellomycetes; o__Tremellales; f__Bulleribasidiaceae; g__Hannaella 0 0 3.0
file-6 k__Fungi 0 299.0 25.0
k__Fungi; p__Ascomycota 41.0 48940.0 0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales 74.0 0 41.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Pichiaceae; g__Dekkera; s__Dekkera_custersiana 7.0 0 7.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Pichiaceae; g__Pichia; s__Pichia_membranifaciens 0 0 18.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetaceae; g__Issatchenkia; s__Issatchenkia_orientalis 0 0 74.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida 0 0 58.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 7298.0 0 49019.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_sp 41534.0 0 0
k__Fungi; p__Basidiomycota; c__Tremellomycetes; o__Tremellales; f__Bulleribasidiaceae; g__Hannaella; s__Hannaella_zeae 0 0 4.0
k__Fungi; p__Fungi_phy_Incertae_sedis; c__Fungi_cls_Incertae_sedis; o__Fungi_ord_Incertae_sedis; f__Fungi_fam_Incertae_sedis; g__Fungi_gen_Incertae_sedis; s__Fungi_sp 2.0 2.0 0
file-7 k__Fungi 0 2004.0 101.0
k__Fungi; p__Ascomycota 45.0 200341.0 0
k__Fungi; p__Ascomycota; c__Dothideomycetes; o__Pleosporales 0 0 3.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales 492.0 0 61.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Dipodascaceae 0 0 126.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Pichiaceae; g__Pichia; s__Pichia_membranifaciens 247.0 0 247.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetaceae; g__Issatchenkia; s__Issatchenkia_orientalis 0 0 492.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida 22.0 22.0 293.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_californica 0 0 23.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 29005.0 0 200692.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_sp 170407.0 0 0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_tropicalis 27.0 0 27.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Diutina; s__Diutina_rugosa 204.0 0 204.0
k__Fungi; p__Basidiomycota; c__Pucciniomycetes; o__Septobasidiales; f__Septobasidiaceae 0 0 41.0
k__Fungi; p__Basidiomycota; c__Pucciniomycetes; o__Septobasidiales; f__Septobasidiaceae; g__Septobasidium; s__Septobasidium_sp 22.0 0 0
k__Fungi; p__Basidiomycota; c__Wallemiomycetes; o__Wallemiales; f__Wallemiaceae; g__Wallemia 6.0 0 6.0
k__Fungi; p__Fungi_phy_Incertae_sedis; c__Fungi_cls_Incertae_sedis; o__Fungi_ord_Incertae_sedis; f__Fungi_fam_Incertae_sedis; g__Fungi_gen_Incertae_sedis; s__Fungi_sp 3.0 3.0 0
file-8 k__Fungi; p__Ascomycota; c__Orbiliomycetes; o__Orbiliales; f__Orbiliaceae 0 21.0 0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Cordycipitaceae; g__Cordyceps 0 0 21.0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Cordycipitaceae; g__Cordyceps; s__Cordyceps_javanica 21.0 0 0
file-9 k__Fungi; p__Ascomycota 0 7.0 0
k__Fungi; p__Ascomycota; c__Orbiliomycetes; o__Orbiliales; f__Orbiliaceae 0 110.0 0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_ethanolica 0 0 7.0
k__Fungi; p__Ascomycota; c__Saccharomycetes; o__Saccharomycetales; f__Saccharomycetales_fam_Incertae_sedis; g__Candida; s__Candida_sp 7.0 0 0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Cordycipitaceae; g__Cordyceps 0 0 110.0
k__Fungi; p__Ascomycota; c__Sordariomycetes; o__Hypocreales; f__Cordycipitaceae; g__Cordyceps; s__Cordyceps_javanica 110.0 0 0

3 Session Info

R version 4.3.2 (2023-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.3 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so;  LAPACK version 3.10.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

time zone: US/Central
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] data.table_1.15.0   cowplot_1.1.3.9000  qiime2R_0.99.6     
[4] ngsReports_2.2.4    tibble_3.2.1        patchwork_1.2.0    
[7] BiocGenerics_0.48.1 ggplot2_3.4.4       dplyr_1.1.4        

loaded via a namespace (and not attached):
  [1] bitops_1.0-7            gridExtra_2.3           permute_0.9-7          
  [4] rlang_1.1.3             magrittr_2.0.3          ade4_1.7-22            
  [7] compiler_4.3.2          mgcv_1.9-1              systemfonts_1.0.5      
 [10] vctrs_0.6.5             reshape2_1.4.4          stringr_1.5.1          
 [13] pkgconfig_2.0.3         crayon_1.5.2            fastmap_1.1.1          
 [16] backports_1.4.1         XVector_0.42.0          labeling_0.4.3         
 [19] pander_0.6.5            utf8_1.2.4              rmarkdown_2.25         
 [22] tzdb_0.4.0              bit_4.0.5               purrr_1.0.2            
 [25] xfun_0.42               zlibbioc_1.48.0         GenomeInfoDb_1.38.6    
 [28] jsonlite_1.8.8          biomformat_1.30.0       highr_0.10             
 [31] rhdf5filters_1.14.1     Rhdf5lib_1.24.2         parallel_4.3.2         
 [34] cluster_2.1.6           R6_2.5.1                RColorBrewer_1.1-3     
 [37] stringi_1.8.3           zCompositions_1.5.0-1   rpart_4.1.23           
 [40] lubridate_1.9.3         Rcpp_1.0.12             iterators_1.0.14       
 [43] knitr_1.45              zoo_1.8-12              base64enc_0.1-3        
 [46] readr_2.1.5             IRanges_2.36.0          Matrix_1.6-5           
 [49] splines_4.3.2           nnet_7.3-19             igraph_2.0.2           
 [52] timechange_0.3.0        tidyselect_1.2.0        rstudioapi_0.15.0      
 [55] yaml_2.3.8              vegan_2.6-4             codetools_0.2-19       
 [58] lattice_0.22-5          plyr_1.8.9              Biobase_2.62.0         
 [61] withr_3.0.0             evaluate_0.23           foreign_0.8-86         
 [64] survival_3.5-7          xml2_1.3.6              Biostrings_2.70.2      
 [67] pillar_1.9.0            phyloseq_1.46.0         checkmate_2.3.1        
 [70] DT_0.32                 foreach_1.5.2           stats4_4.3.2           
 [73] NADA_1.6-1.1            plotly_4.10.4           generics_0.1.3         
 [76] vroom_1.6.5             RCurl_1.98-1.14         truncnorm_1.0-9        
 [79] hms_1.1.3               S4Vectors_0.40.2        munsell_0.5.0          
 [82] scales_1.3.0            glue_1.7.0              Hmisc_5.1-1            
 [85] lazyeval_0.2.2          tools_4.3.2             forcats_1.0.0          
 [88] rhdf5_2.46.1            grid_4.3.2              tidyr_1.3.1            
 [91] ape_5.7-1               colorspace_2.1-0        nlme_3.1-164           
 [94] GenomeInfoDbData_1.2.11 htmlTable_2.4.2         Formula_1.2-5          
 [97] cli_3.6.2               kableExtra_1.4.0        fansi_1.0.6            
[100] viridisLite_0.4.2       svglite_2.1.3           ggdendro_0.1.23        
[103] gtable_0.3.4            digest_0.6.34           farver_2.1.1           
[106] htmlwidgets_1.6.4       htmltools_0.5.7         multtest_2.58.0        
[109] lifecycle_1.0.4         httr_1.4.7              bit64_4.0.5            
[112] MASS_7.3-60.0.1